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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015900386.1_cds_XP_016450452.1_44903
CDS Infomation

[gene=LOC107775248] [db_xref=GeneID:107775248] [protein=probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 isoform X2] [protein_id=XP_016450452.1] [location=complement(join(49545..49566,49844..49967,50210..50279,50433..50580,51378..51501,51768..51860,51972..52186,52720..52806,54281..54372,55054..55170,55306..55358,55530..55747,55909..56013,56131..56223,59442..59641))] [gbkey=CDS]
Sequence

ATGGCGGATTTACCTATAGTTCGATTTGAGGAGAAAATCATAGAAACAGTGGAGAAAAAC
CCTGTAGTGGTAGTTATTGGTGAGACCGGTTCTGGTAAAAGTACACAACTTTCACAAATG
CTTTATAAAAGAGGGTATGCTAAATCTGGAATGATCGCTGTTACTCAGCCTCGCCGCGTT
GCTGCAGTTTCTGTTTCTAGACGAGTTGCACAGGAGCAAAATGTTCGACTTGGAGAGGAA
GTCGGTTATGCCATAAGATTTGAAGATAGAACTTCGGAGAAAACACATATCAAATATCTT
ACTGATGGAGTGCTCCTCCGCGAGAGTCTTTTTAATCCGGAGCTGAATCAGTATTCTGTC
ATCATATTGGATGAAGCACATGAGAGGAGTTTGAACACGGATATATTGCTTGGTTTAATG
AAAAGATTAATTAAACGGCGTCACTCAAACTTGAAAGTTTTGATCACATCAGCAACTCTT
GATGGTGGAAAGGTATCTAGGTTCTTCTCCGACTGTCCCGTCCTTACCGTACCAGGCGAG
TTATTTCCTGTGGAAATAGTACACATCTCAGAGCGCCCTAAAAACTATGTGGAGGCTTCT
CTAAAAACAGCTATTGATATTCACGTACGGGAGCCAGAAGGGGACATTTTAATATTTTTG
ACAGGGCAGGATGACATAGAGAAATTGGTATTGAAGTTGGAGGAGAAAATTCAAAACTTA
GAAGAAGGTTCTTGTCTGGATGCCTTAATTCTTCCTCTTCATGGATCCTTGCCACCTGAC
ATGCAGGTGCGTGTTTTCAGTCCTCCACCTCCACATTGTAGGCGATTTATTGTTTCTACA
AATATTGCTGAAACTTCTTTGACTGTTGACGGTGTTGTGTATGTCATTGACTCGGGGTAT
GTGAAGCAACGGCAATATAACCCATCAACTGGCATGTACTCTTTGGAGGTTGTGCAGATT
AGCAAGGTGCAGGCAAAGCAGCGTGCAGGACGCGCTGGAAGAACTCGTCCTGGAAAGTGT
TATCGTTTATATCCCTCTATGGTTTACCATGACGATTTTTTGGATGCCACCGTTCCTGAA
ATACAAAGGTCTTCACTGGCTGAAACTGTACTTTATTTGAAGTCCTTAGATCTCGCTGAT
ATGGATATTCTCAAATTTGATTTTCTCGACTCTCCTTCCATGGAGTCTTTAGAGGATGCC
TTGAAGCAATTATATTTAGTCGATGCAATTGATGAAAATGGTTCAATCACAAGCCTTGGA
CGAAAGATGGCTGAGCTTCCACTGGAACCTTCTCTTTCCAGGACCTTACTAGAGGCAAAT
GAGTTGGATTGTTTGTCCCAAGCACTGACTGTTGTTTCCATGTTGTCTGCTGAGACCACG
CTGCTTCCTGCCCCAAGTAAGAGCTCTGAGAAGAAGAGGAAGCACACTCCTTCGAACCTT
CCTGATGGTTCTGGCTTGGGTGATCACATCCAGCTACTCCAAATTTATGAGCAATGGTAT
CAGACCGACTACAACGTAGACTGGTGTAAAGAGAACAACTTACAGGTCCGCGGGATGCTG
TTCGTGAGAGATGTCAGGAAACAATTATCTCAAATAATGCATAAAATTGCTAAAGGCTCA
TTAGATGTCCAAACAAGCAAAAGACGGAGAGACAGCCAACAGGAGTATAGAATATTGAGG
AAAGCATTGTTCATTGGCTACGCAAATCAGCTTGCTGAACGGAGCATTCGGCATAACGGG
TCCATCCATCTTCTGTGCTAA

Peptide Sequence

PEP ID

XP_016450452.1
PEP Infomation

PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 isoform X2 [Nicotiana tabacum]
Sequence

MADLPIVRFEEKIIETVEKNPVVVVIGETGSGKSTQLSQMLYKRGYAKSGMIAVTQPRRV
AAVSVSRRVAQEQNVRLGEEVGYAIRFEDRTSEKTHIKYLTDGVLLRESLFNPELNQYSV
IILDEAHERSLNTDILLGLMKRLIKRRHSNLKVLITSATLDGGKVSRFFSDCPVLTVPGE
LFPVEIVHISERPKNYVEASLKTAIDIHVREPEGDILIFLTGQDDIEKLVLKLEEKIQNL
EEGSCLDALILPLHGSLPPDMQVRVFSPPPPHCRRFIVSTNIAETSLTVDGVVYVIDSGY
VKQRQYNPSTGMYSLEVVQISKVQAKQRAGRAGRTRPGKCYRLYPSMVYHDDFLDATVPE
IQRSSLAETVLYLKSLDLADMDILKFDFLDSPSMESLEDALKQLYLVDAIDENGSITSLG
RKMAELPLEPSLSRTLLEANELDCLSQALTVVSMLSAETTLLPAPSKSSEKKRKHTPSNL
PDGSGLGDHIQLLQIYEQWYQTDYNVDWCKENNLQVRGMLFVRDVRKQLSQIMHKIAKGS
LDVQTSKRRRDSQQEYRILRKALFIGYANQLAERSIRHNGSIHLLC

Transcript Sequence

Gene sequence data has not been registered.